Hint 12 boyle method.
Hint footprinting. But rgt hint footprinting seems to take atac seq or histone. Dna footprinting is a method of investigating the sequence specificity of dna binding proteins in vitro. This technique can be used to study protein dna interactions. Rgt hint footprinting atac seq paired end organismsc sc1bam sc1peaksbed output prefixsc1 and i get the error.
Ngs based data are significantly affected by biases which are inherent to the experimental protocols. Dna footprinting dna footprinting workflow dna footprinting is a method of investigating the sequence specificity of dna binding. If so can you advise how to set this up. Are you supporting a model to use both.
In this tutorial we will show how to use hint atac to compare changes in activity of transcription factors with differential footprinting. To perform footprinting you need at least. Since we are interested in computational footprinting with. Once you installed mm10 using setupgenomicdatapy you should be able to run rgt hint.
We describe here how to detect footprints using hint for atac seq dnase seq and histone modifications data.
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